CoursefileSC462 91.6KB PDF document
Weekly outline
2 January - 8 January
9 January - 15 January
Lecture 1: Introduction to synthetic biology and headlines
16 January - 22 January
Lecture 2: Introduction to molecular biology, Challenges in Molecular Biology
Leccture 3: Human Genome Project and Video of Life 2.0
Lecture 4: Central Dogma of Life and Extract your DNA!, DNA EXTRACTION VIRTUAL LAB,
PCR Virtual Lab, GEL ELECTROPHORESIS VIRTUAL LAB
Lecture 5: ORF Finder and Genetic Code,Understanding human genome using bioinformatics
Lecture 6: Introduction to Proteins
23 January - 29 January
Lecture 7: Handson Matlab for sequence analysis using bioinformaticss toolbox.
Take Home Exercise 1: Perform all the sequence anlaysis Matlab commands for HIV genome (BD187399).
Lecture 8: Introduction to protein structures, protein domains and motifs
Lecture 9: Demo on BLAST and PDB.
Call for Participation
30 January - 5 February
Lecture 10: Demo on Rasmol
Lecture 11: RNA secondary structures, Abstract Machines of systems biology: Gene Machine, protein machines and membrane machines, molecular interaction maps.
6 February - 12 February
Lecture 12: Introduction to differential equation, SPiM simulator and Pi Calculus.
Lecture 13: Gene Machines: Gene Regulatory Networks.
13 February - 19 February
Lecture 14: Genetic Switch
Lecture 15 (16 Feb 2017): Surprise Quiz
Lecture 16: Strcutural Synthetic Biology
20 February - 26 February
Lecture 17: Genetic Toggle Switch
Lecture 18: Logistic Equation, Phase Analysis
Lecture 19: Bifurcation analysis, Transcritical Bifurcation
Lecture 20: Pitchfork bifurcation
27 February - 5 March
For Synthetic Biology Project Submission: Submit the following for the project. Each of the items should be zipped in a folder.
1. Project report in latex format (including all source files such as figures, .tex file and pdf files). Include figures created by you, if you are using an image from another source, include the image source and credits. Include references to understand the project well.
2. Link to youtube video (The video should contain your explanation of the project. You can use any software to create the video. have slides. There is no limitation on the time length of the video however 1 one hour video should be good enough to explain the project.)
3. The ppt file for the presentation.
4. If you opt to develop a software then please include a complete source code and help file including a manual on how to use the software.
Projects topics assigned are for project work that you can perform in a group. From topics assigned to group members, you can select one topic for the project. The project must include ppt and report which can be in common to all group members.
For video, each member has to prepare the separate video. You can prepare video on topic assigned to you.
Note that: Please note that uploaded reports and PPT will be checked for plagiarism using automated software. So do not copy paste. Familiarise yourself about plagiarism by reading here http://www.plagiarism.org/plagiarism-101/what-is-plagiarism/. Please prepare your own video and do not use videos from other resources. Plagiarism found in any form will be graded F.
6 March - 12 March
Lecture 21: Stability Analysis
Lecture 22: Null lines, Trajectory
13 March - 19 March
List of scribe notes is uploaded. The scribe should be prepared in latex. All the files including a source with figures and references must be uploaded. Sample scribe note is uploaded.
Each student is assigned to the topic. Scribe note should include at least the following section:
- Abstract
- Introduction
- Detail description of the topic
- Example
- Tools and database
- Discussion
- References
One may add according to the topic requirement.
In Sem Break (13 March - 17 March)
20 March - 26 March
Exam Week Second In Sem: March 22 - March 25
27 March - 2 April
Presentation Schedule
Sr No Student Id Student Name Date 1 201301087 TARAL ANKITKUMAR 30/3/2017 2 201301124 SANGEETA MEENA 30/3/2017 3 201301137 ANKIT LAKRA 30/3/2017 4 201301163 SANKALP NIGAM 30/3/2017 5 201301175 BATHULA AJAY RAJ 30/3/2017 6 201301183 SARTHAK KHANDEKAR 30/3/2017 7 201301200 SHEFALI KASHYAP 31/3/2017 8 201301202 RAMAN KUMAR DOUCHANIYA 31/3/2017 9 201301215 ROHIT MEENA 31/3/2017 10 201301218 SUNEET MEENA 31/3/2017 11 201301239 PANCHAL JINAL RAJENDRAKUMAR 31/3/2017 12 201301419 THAKAR RAJ JAYRAJBHAI 31/3/2017
3 April - 9 April
13 201301444 ANKUL JAIN 6/4/2017 15 201401001 MEHTA MEDHA RAJESH 6/4/2017 16 201401002 PENUGONDA VINEETH 6/4/2017 17 201401004 KOTHARI SAMARTH KETANKUMAR 6/4/2017 18 201401006 DAIYA BRIJESH BHARAT 6/4/2017 19 201401007 PIRATLA SHOURI 6/4/2017 20 201401010 MUTTINENI AAKASH 6/4/2017 21 201401011 KONICA TALLARI 6/4/2017 22 201401016 SHASHWAT MISHRA 6/4/2017 23 201401017 ABHINAV GADDE 6/4/2017 24 201401018 SHAH RISHI DILPESHBHAI 6/4/2017 25 201401019 CHAKKA THARUN 6/4/2017 26 201401022 PANKAJ SIROHI 6/4/2017 27 201401023 DIVYA VERMA 6/4/2017 28 201401028 TANAY MADHUKAR BORKAR 6/4/2017 29 201401030 HARSHUL VAISHNAV 6/4/2017 30 201401031 AGRAWAL AMAY AJAYKUMAR 6/4/2017 31 201401032 SARODE KARTIKEY SANJAY 6/4/2017 32 201401033 JOSHI TORAL JAYANTKUMAR 6/4/2017 33 201401034 GAJJAR ANIKET JAYESH 7/4/2017 34 201401036 VASIREDDY V SAI TEJA 7/4/2017 35 201401037 SHINJINI GOSWAMI 7/4/2017 36 201401038 YASH KUMAR 7/4/2017 37 201401039 RAHI UTPAL SHETH 7/4/2017 38 201401040 SAI SWETHA PASAM 7/4/2017 39 201401047 NACHIKET VIKRAM TRIVEDI 7/4/2017 40 201401048 EAGAPATI INDRANI CHOWDARY 7/4/2017 41 201401049 BHANDERI SHREYAS VELJIBHAI 7/4/2017 42 201401051 TRAPASIYA MAULIK AMRUTLAL 7/4/2017 43 201401052 SUDIPTA HALDAR 7/4/2017 44 201401054 UDGIRKAR SANKET SHRIKANT 7/4/2017 45 201401055 KRITIKA SOMANI 7/4/2017 46 201401057 DHRUV SINGH 7/4/2017 47 201401058 PATEL ABHISHEK DIPAKBHAI 7/4/2017 48 201401059 UDHANI JAYESH BHAGWANDAS 7/4/2017 49 201401060 MAYANK KUMAR SAHLOT 7/4/2017 50 201401061 AKSHAY BHAGCHAND VIJAYVERGIA 7/4/2017 51 201401063 BHAGAT NIKITA RAJENBHAI 7/4/2017 52 201401064 BALVINDER SINGH SETHI 7/4/2017 53 201401065 CHIMBILI SAI NEERAJ 7/4/2017
10 April - 16 April
54 201401068 SHUBHAM KHANDELWAL 11/4/2017 55 201401069 VERTIKA K BINDAL 11/4/2017 56 201401070 ANURAG VIJAY GUPTA 11/4/2017 57 201401073 PITTA NANCY 11/4/2017 58 201401077 GHADIA DIVYESH GIRDHARBHAI 11/4/2017 59 201401078 AAYUSH DESHRAJ 11/4/2017 60 201401079 SALONI DALAL 11/4/2017 61 201401080 PATIL PRANAY KUMAR REDDY 11/4/2017 62 201401083 TANGUDU SRIHITHA 11/4/2017 63 201401084 BASIREDDYGARI JAYANTHESWAR REDDY 11/4/2017 64 201401085 DARJI VAIDEHI PRAKASH 11/4/2017 65 201401087 KATRAGADDA PAAVAN PRANEETH 11/4/2017 66 201401088 AKSHAY DHANANJAY BHAMARE 11/4/2017 67 201401089 PARTH RATHOD 11/4/2017 68 201401091 PATEL HETKUMAR SURESHBHAI 11/4/2017 69 201401093 PADARTHY ABHISHANTH 11/4/2017 70 201401094 VIJAY KUMAR 11/4/2017 71 201401095 ATRAYEE DEB 11/4/2017 72 201401097 LAGADAPATI KRISHNA CHAITHVIKA 11/4/2017 73 201401098 ANUSHA PHADNIS 11/4/2017 74 201401101 GAMITA BANAPHAL 11/4/2017 75 201401102 JONNALAGADDA DHARANI CHOWDARY 11/4/2017 76 201401104 SONAL DAMOR 11/4/2017 77 201401108 TIRTH CHETAN SHAH 11/4/2017 78 201401110 SHASHANK BISWAS 11/4/2017 79 201401112 VINAY KUMAR MEENA 11/4/2017 80 201401113 BIRVA HEMEN PATEL 18/4/2017 81 201401115 DEVANSHI BANSAL 18/4/2017 82 201401116 JUGAL KALAL 18/4/2017 83 201401120 BHUT HARSHIT ANILBHAI 18/4/2017 84 201401121 NERURKAR NANDINI SUJIT 18/4/2017 85 201401122 ANCHIT DAVE 18/4/2017 86 201401123 PAREKH KEVAL MAYUR 18/4/2017 87 201401124 NARMIT SWETAL MASHRUWALA 18/4/2017 88 201401128 VANDIT DARSHAN MODI 18/4/2017 89 201401130 DATANI PIYUSH 18/4/2017 90 201401132 TRIVEDI JAY KETANKUMAR 18/4/2017 91 201401135 DAVE MITHIL PARESHBHAI 18/4/2017 92 201401138 PRAJAPATI DHAVAL HARSHADBHAI 18/4/2017 93 201401139 SARDHARA HARDIK 18/4/2017 94 201401140 CHAUHAN PARTH ASHOKKUMAR 18/4/2017 95 201401142 PARATE HITESHKUMAR PRABHAKARBHAI 18/4/2017 96 201401143 PATEL AKSHAYKUMAR MAHESHBHAI 18/4/2017 97 201401144 SHAH KISHAN VIJAYKUMAR 18/4/2017 98 201401145 PALADIYA KETAN HARIBHAI 18/4/2017 99 201401146 CHAUDHARI PRASHANTKUMAR KIRANBHAI 18/4/2017 100 201401148 PATEL MITALI NARENDRABHAI 18/4/2017 101 201401149 MEHUL N VASAVA 18/4/2017 102 201401155 SHETH VIRAJ APURVABHAI 18/4/2017 103 201401159 KACHHIA RUCHI MILANBHAI 18/4/2017 104 201401161 VALA SURJIT BAVKUBHAI 18/4/2017
17 April - 23 April
105 201401163 PIPALIYA RAJAN DINESHBHAI 20/4/2017 106 201401164 TARUNKUMAR BARIA 20/4/2017 107 201401166 PARMAR RAHUL DILIPBHAI 20/4/2017 108 201401167 GHUSAR HARDIK 20/4/2017 109 201401168 KACHA GAURAV 20/4/2017 110 201401170 LALAIYA MAYANK DINESHBHAI 20/4/2017 111 201401171 DAVE HEET AMITKUMAR 20/4/2017 112 201401172 BHUSARA ARCHANAKUMAREE DINESHBHAI 20/4/2017 113 201401173 DRASHTI BIPINCHANDRA BHARTI 20/4/2017 114 201401175 PRATIHAR SAURAVKUMAR KIRANKUMAR 20/4/2017 115 201401176 DEVARSHI CHANDRAKANT KACHA 20/4/2017 116 201401177 VAGHELA PARTH DINESHBHAI 20/4/2017 117 201401179 PATEL NIRAV KAMLESHBHAI 20/4/2017 118 201401182 SINGAL KEYUR ANILKUMAR 20/4/2017 119 201401183 VAJA NISHANT DINESHBHAI 20/4/2017 120 201401185 PATEL DIGMAKUMARI 20/4/2017 121 201401190 RONAK CHANDRAKANT ODHAVIYA 20/4/2017 122 201401191 PRATISH ANAND 20/4/2017 123 201401192 PARMAR HIRAL UMAKANT 20/4/2017 124 201401199 AGARWAL RESHEIL SANJEEV 20/4/2017 125 201401200 PIYUSHI PAWAN 20/4/2017 126 201401201 AYUSHI JAIN 20/4/2017 127 201401202 PRAJAPATI SMITKUMAR MAHENDRABHAI 20/4/2017 128 201401206 VAGHELA VIRALKUMAR CHANDRAKANTBHAI 20/4/2017 129 201401208 MALIK AASIM MOHMMODASFAK 20/4/2017 130 201401210 SAPARIYA ABHI MUKESHKUMAR 20/4/2017 131 201401212 KOSHIYA JAYMIL BHARATBHAI 20/4/2017 132 201401213 PRAJAPATI KALPESH TULSHIBHAI 20/4/2017 133 201401214 MANVA MOHIBAHEMAD ABDULMAZID 20/4/2017 134 201401215 PATEL DHRUV PRAKASHBHAI 20/4/2017 135 201401217 DALSANIYA VIVEKKUMAR SURESHBHAI 20/4/2017 136 201401218 PARMAR VIKAS SURESHBHAI 20/4/2017 137 201401219 AGRAWAL PRACHI RAJESH 20/4/2017 138 201401222 PATEL VAIBHAVKUMAR 20/4/2017 139 201401227 CHHATRALA NISHIT ASHISHKUMAR 20/4/2017 140 201401228 MANAN ASHISH KSHATRIYA 20/4/2017 141 201401229 BODA NISHTHA AMRUTBHAI 20/4/2017 142 201401230 ROHAN BANSAL 20/4/2017 143 201401233 SHAH PARSHWA RAVINDRA 20/4/2017 144 201401234 PARTH VASAVA 20/4/2017 145 201401241 SHAH JAY GAURANG 20/4/2017 146 201401242 PATEL JAY SHAILESHKUMAR 21/4/2017 147 201401243 PATEL SAUMIL KAMLESHBHAI 21/4/2017 148 201401244 PARIKH SAMARTH SANJAY 21/4/2017 149 201401247 PARMAR DHAVAL JAGDISHBHAI 21/4/2017 150 201401401 ADITYA RAJ 21/4/2017 151 201401408 KEVAL DHRUVESHKUMAR SHAH 21/4/2017 152 201401410 SINGULUR SURYA VAMSI GOWTAM 21/4/2017 153 201401411 SYED MOHAMMAD FUZAIL AHAMED 21/4/2017 154 201401412 PARVATANENI MANASA 21/4/2017 155 201401414 VYAS MAHARSHI DIPAKKUMAR 21/4/2017 156 201401423 SURBHIT RAO 21/4/2017 157 201401427 HARSH VARDHAN HYANKEY 21/4/2017 158 201401429 PANDYA SHAIRIL BHAVINKUMAR 21/4/2017 159 201401431 CHANDWANI KHUSHBOO MUKESH 21/4/2017 160 201401438 GANDHI ADWAIT ALKESH 21/4/2017 161 201401440 DANGAR MAYURKUMAR VINUBHAI 21/4/2017 162 201401444 THAKKAR VATSAL JAYESHBHAI 21/4/2017 163 201401446 GELAT HARSHIT 21/4/2017 164 201401450 SHAH RAJ KETAN 21/4/2017 165 201401455 VIRAL PANDEY 21/4/2017 166 201401456 LIMBACHIA MIHIR 21/4/2017 167 201621011 EKTA RAJPUT 21/4/2017 168 201621015 JAYANTI MISHRA 21/4/2017
24 April - 30 April
For the project projection, only .ppt files should be uploaded. No PDF will be evaluated.